Package: symphony
Title: Efficient and Precise Single-Cell Reference Atlas Mapping
Version: 0.1.3
Authors@R: c(
    person(given = "Joyce", family = "Kang",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-1962-1291"),
           email = "joyce.b.kang@gmail.com"),
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com", 
           role = c("aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Soumya", "Raychaudhuri", 
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implements the Symphony single-cell reference building and
        query mapping algorithms and additional functions described in
        Kang et al
        <https://www.nature.com/articles/s41467-021-25957-x>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, testthat, ggthemes, ggrepel, ggrastr
LinkingTo: Rcpp, RcppArmadillo
Imports: methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr,
        ggplot2, stats, utils, magrittr, data.table, tibble, Matrix,
        tidyr, rlang, RColorBrewer, RANN
VignetteBuilder: knitr
Depends: R (>= 3.5)
NeedsCompilation: yes
Packaged: 2026-05-25 18:32:20 UTC; root
Author: Joyce Kang [aut, cre] (ORCID:
        <https://orcid.org/0000-0002-1962-1291>), Ilya Korsunsky [aut]
        (ORCID: <https://orcid.org/0000-0003-4848-3948>), Soumya
        Raychaudhuri [aut] (ORCID:
        <https://orcid.org/0000-0002-1901-8265>)
Maintainer: Joyce Kang <joyce.b.kang@gmail.com>
Config/pak/sysreqs: libicu-dev
Repository: https://joycekang.r-universe.dev
Date/Publication: 2026-05-25 15:20:02 UTC
RemoteUrl: https://github.com/cran/symphony
RemoteRef: HEAD
RemoteSha: 1124a8c1e64f28327decfeec4483dbb763a9782f